Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858595.1_cds_XP_016513989.1_26485
CDS Infomation

[gene=LOC107830837] [db_xref=GeneID:107830837] [protein=zinc finger CCCH domain-containing protein 5-like isoform X2] [protein_id=XP_016513989.1] [location=complement(join(55145..56087,58082..58305,58493..58567,58866..58982,59580..59672,60796..60954,61141..61278,61405..61557,62723..63103))] [gbkey=CDS]
Sequence

ATGACGGAACCGATATCAATCGAAGAAGACGACCGGCAAGTATCGGAACTTCAACAATGC
GGTGCGGCGGCGGCGATATGCAAAAATCGCAAGGAGAAACGGAGGTTGACTAAGAAGGAG
AAACGGAAGCAGAAAAGGAAGGAACTCGCCGAGAAGGCGCGCCAGGAAGAGGAGGCTAAG
CTGAATGATCCGGAGGAGCTTCGCAGGATTCAGCTGGAGGAGGAGAAAGAGAAGGAAAGA
TTAGAGAGAGAAAGGAGAGAGTTTGAGGAGAGAGAAAGACTCTTCCTCGAAGAACTGGCT
CGAAAGAAAGCTCAGGAGGAAGAAGAAGAAGAAGAGCGAAGGAGAGCAGAAGATGAGGAA
GAAAAAGCGAAACAAAGCCAGGTTGCTCTTGAGAATGAATCAGATGGAGATGACGAGTGG
GAATATGTAGAAGATGGGCCTCCCGAAATTATATGGCAAGGAAATGAGATAATTGTGAAG
AGGAATAAAGTGAAAGTAAAAAAGAAGGATCCCAATCATGTGATTGTTAAAGAGGATCCC
AATAGGCCAACATCCAATCCACTGCCTCCACAATCTGAAGTCTTTGCTGACTACAAGAAT
GCTTCATCTCTTTCAGCACTGCAGTTATTGGAGAATGTTGCTCTACAAACTCCGAATTTT
GGAACTGAGCAGGATAAAGCTCATTGTCCTTTCCACCTAAAAACTGGGGCTTGTAGATTT
GGTTCACGCTGCAGTAGGGTTCATTTTTATCCTGATAAATCCTGCACACTGCTCATGAAG
AACATGTATGCTGGACCTGGTCTTGCTTGGGAGCAGGATGAGGGGCTTGAGTGTACAGAT
GAGGAAGTTGAACGTAGTTATGAGGAATTCTATGAGGATGTTCACACAGAATTTTTGAAG
TTTGGAGAAATTATAAATTTCAAGGTGTGTAGAAACAGTTCATCTCATTTGCGAGGGAAT
GTTTATGTACACTACAAAGATATAGATTCTGCGGTGCTTGCTTATCGTTCTATTAATGGC
CGTTACTTTGCTGGCAAACAGATTACATGCGAGTTTGTTAGTGTAACAAAATGGAAGGTT
GCCATATGTGGGGAATTCATGAAATCGAAGCTTAAGTCATGCTCTCGTGGAATGACGTGC
AACTTCATCCATTATTTCCGCAATCCTGGTGGGGATTATGAATGGGCAGATTTGGATAAA
CCACCGCCAAGATACTGGTTAAAAAAGATGGCTGCTTTGTTTGGATACACTGATGAGTCT
GTCTATGATAGACGGCTTGAACGGAAAAACTCAGAATGGATGTTGAATTCCTACAAGATG
CCGACAGCTGATTCTGACAGGCATCGCTCTGTAATGTCGGATTCAAGGGAGAGAAGGTCC
AGCTCAAGGGATTCAAGGATCCACTATAAGGATTATGATGGTCATAAGAGGGCACATCAA
GAGAGAGACGGCAGTATTGATAGGAAACGGCGCAAAATTCTTGATAAGAAACGATACGTA
GAGGAAACAGGACAACATGGTAACAATAGATATCATAGTAGTGACTCTGATGGGGATTTA
TCTGAGAGAGAGAGAGAGGGAGTTATTAGGCGCAGTCACAGCAGAAGGAAAAGATCAAGA
ATCCACCATAGTGAAAAAATGGGGCATCGACATTGTAATGGTGACAGCAAAAGAGGGGTT
AGCCATTCTGACTCTGATGATGATTTGCCGGAAAAGATTAGATATAGAGATGCAGGATCT
GGAAACAAAGAGAGGGGCCCAAGACATTGGAAGGAAGATCAAAGTACATATTCTAGCGAT
GAGTGGTTCAGTGAGATACGAGACAGAAATTGCCATCACAAGAAAACTAAAAGAAGAAGC
AGGTCTAGGCGTCATGACAGTGCTCCATCATCGCCCGATCGACGGGATAAGAGAAGAGCA
AGCCATGATAGTAGTACTACTGGAGATTGGACTGCTGCTGTCACAGATAAAAGAAAGCCA
AGTTCTAACAAGAGTGTCGATTCAGATAGGGATTATCAATATCATCATAATGAAGACATC
GAGGAAAGAGGCCGATGGGAACCTGATGAAGGTGCAACTGCAACATTCTCTAAAAGTAGT
AAAGGGTCTGAAATTGATGATTCTGAAGATCACAATGTGGAATCTGAGCTGAATGATGAT
GGGGACTGTAGAGGGAGTACACCAAGGGGGAGCAGCCGATCAAAGAAGCTAAAAGGATCT
AAAAAGAATAATAGTAGTCATGAGGAAAAAGACAATAATTACGATGGACACAAACAGCAT
TAA

Peptide Sequence

PEP ID

XP_016513989.1
PEP Infomation

PREDICTED: zinc finger CCCH domain-containing protein 5-like isoform X2 [Nicotiana tabacum]
Sequence

MTEPISIEEDDRQVSELQQCGAAAAICKNRKEKRRLTKKEKRKQKRKELAEKARQEEEAK
LNDPEELRRIQLEEEKEKERLERERREFEERERLFLEELARKKAQEEEEEEERRRAEDEE
EKAKQSQVALENESDGDDEWEYVEDGPPEIIWQGNEIIVKRNKVKVKKKDPNHVIVKEDP
NRPTSNPLPPQSEVFADYKNASSLSALQLLENVALQTPNFGTEQDKAHCPFHLKTGACRF
GSRCSRVHFYPDKSCTLLMKNMYAGPGLAWEQDEGLECTDEEVERSYEEFYEDVHTEFLK
FGEIINFKVCRNSSSHLRGNVYVHYKDIDSAVLAYRSINGRYFAGKQITCEFVSVTKWKV
AICGEFMKSKLKSCSRGMTCNFIHYFRNPGGDYEWADLDKPPPRYWLKKMAALFGYTDES
VYDRRLERKNSEWMLNSYKMPTADSDRHRSVMSDSRERRSSSRDSRIHYKDYDGHKRAHQ
ERDGSIDRKRRKILDKKRYVEETGQHGNNRYHSSDSDGDLSEREREGVIRRSHSRRKRSR
IHHSEKMGHRHCNGDSKRGVSHSDSDDDLPEKIRYRDAGSGNKERGPRHWKEDQSTYSSD
EWFSEIRDRNCHHKKTKRRSRSRRHDSAPSSPDRRDKRRASHDSSTTGDWTAAVTDKRKP
SSNKSVDSDRDYQYHHNEDIEERGRWEPDEGATATFSKSSKGSEIDDSEDHNVESELNDD
GDCRGSTPRGSSRSKKLKGSKKNNSSHEEKDNNYDGHKQH

Transcript Sequence

Gene sequence data has not been registered.